If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ), 'gf_id' => 'HOM05D000816', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000816' ), 'data_identifier' => 'HOM05D000816', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000816', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '726', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p12170' => 'bna', 'A07p09360' => 'bna', 'A10p31550' => 'bna', 'Aa31LG11G5420' => 'aar', 'Aa31LG3G8100' => 'aar', 'Aa31LG8G9630' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.1657' => 'aag', 'Actinidia04461' => 'ach', 'Actinidia05327' => 'ach', 'Actinidia10405' => 'ach', 'Actinidia11324' => 'ach', 'Actinidia13157' => 'ach', 'Actinidia13551' => 'ach', 'Actinidia18570' => 'ach', 'Actinidia31296' => 'ach', 'Actinidia40070' => 'ach', 'Actinidia40071' => 'ach', 'Ah.04g154270' => 'amhyb', 'Ah.04g154290' => 'amhyb', 'Ah.07g208340' => 'amhyb', 'Ah.12g060050' => 'amhyb', 'Ah.15g091180' => 'amhyb', 'AL3G37760' => 'aly', 'AL6G14200' => 'aly', 'AL8G25920' => 'aly', 'Aqoxy1G00864' => 'aox', 'Aqoxy1G00965' => 'aox', 'Aqoxy2G01474' => 'aox', 'Aqoxy2G02309' => 'aox', 'Aqoxy5G00276' => 'aox', 'Aqoxy7G00598' => 'aox', 'arahy.Tifrunner.gnm1.ann1.10U64H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4CX26M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5B6C8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T95J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R1MME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QU84Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CPLC2W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN45GV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LP1IUI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MZB5SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q63BAR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SCIL2E' => 'arhy', 'AT3G23160' => 'ath', 'AT5G04550' => 'ath', 'AT5G51670' => 'ath', 'ATR0559G236' => 'atr', 'ATR0680G394' => 'atr', 'ATR0810G133' => 'atr', 'ATR0820G122' => 'atr', 'ATR0820G166' => 'atr', 'Atru.chr1.625' => 'acertr', 'Atru.chr12.954' => 'acertr', 'Atru.chr4.2139' => 'acertr', 'Atru.chr8.1660' => 'acertr', 'Atru.chr8.1661' => 'acertr', 'Atru.chr8.2021' => 'acertr', 'Atru.chr8.2030' => 'acertr', 'AUR62002261' => 'cqu', 'AUR62015478' => 'cqu', 'AUR62016091' => 'cqu', 'AUR62025797' => 'cqu', 'AUR62033598' => 'cqu', 'AUR62035038' => 'cqu', 'AUR62037893' => 'cqu', 'AUR62042380' => 'cqu', 'BcaB01g05910' => 'bca', 'BcaB05g23993' => 'bca', 'BcaB06g26448' => 'bca', 'BcaC03g14582' => 'bca', 'BcaC06g32165' => 'bca', 'BcaC09g51561' => 'bca', 'BcaNung05854' => 'bca', 'BolC2t06156H' => 'bol', 'BolC2t08160H' => 'bol', 'BolC3t12765H' => 'bol', 'BolC7t41936H' => 'bol', 'BolC9t59966H' => 'bol', 'BraA02t04818Z' => 'bra', 'BraA02t06281Z' => 'bra', 'BraA07t28732Z' => 'bra', 'BraA10t45201Z' => 'bra', 'C02p01990' => 'bna', 'C02p20280' => 'bna', 'C03p02130' => 'bna', 'C07p14410' => 'bna', 'C09p72220' => 'bna', 'CAN.G135.59' => 'can', 'CAN.G324.22' => 'can', 'CAN.G793.4' => 'can', 'CAN.G824.38' => 'can', 'CAN.G916.6' => 'can', 'CANSAT21G0575' => 'cansat', 'CANSAT35G0652' => 'cansat', 'CANSAT56G3243' => 'cansat', 'CANSAT78G1340' => 'cansat', 'CANSAT80G2642' => 'cansat', 'CARHR099090' => 'chi', 'CARHR208720' => 'chi', 'CARHR264450' => 'chi', 'CARHR264510' => 'chi', 'Carub.0003s2337' => 'cru', 'Carub.0006s0349' => 'cru', 'Carub.0008s1169' => 'cru', 'Ca_05395_v3' => 'car', 'Ca_07342_v3' => 'car', 'Ca_08958_v3' => 'car', 'Ca_09814_v3' => 'car', 'Ca_09890_v3' => 'car', 'Ca_10482_v3' => 'car', 'Ca_11618_v3' => 'car', 'Ca_16693_v3' => 'car', 'Ca_28139_v3' => 'car', 'Ca_28151_v3' => 'car', 'Cc02_g03850' => 'ccan', 'Cc03_g05100' => 'ccan', 'Cc03_g05600' => 'ccan', 'Cc06_g02310' => 'ccan', 'Cc06_g05080' => 'ccan', 'CDE02G1756' => 'cde', 'CDE02G3436' => 'cde', 'CDE04G0763' => 'cde', 'CDE05G0995' => 'cde', 'CDE06G0361' => 'cde', 'CDE06G1716' => 'cde', 'CDE06G2558' => 'cde', 'CDE07G0070' => 'cde', 'CDE07G1017' => 'cde', 'CDE09G1379' => 'cde', 'CDE12G0179' => 'cde', 'CDE12G0849' => 'cde', 'Cfa008230' => 'cfa', 'Cfa008352' => 'cfa', 'Cfa012447' => 'cfa', 'Cfa016518' => 'cfa', 'Cfa021500' => 'cfa', 'Cfa022927' => 'cfa', 'Ciclev10004611m.g' => 'ccl', 'Ciclev10004928m.g' => 'ccl', 'Ciclev10011435m.g' => 'ccl', 'Ciclev10013886m.g' => 'ccl', 'Ciclev10019042m.g' => 'ccl', 'Ciclev10019193m.g' => 'ccl', 'Ciclev10031012m.g' => 'ccl', 'CiPaw.01G188100' => 'cil', 'CiPaw.02G115000' => 'cil', 'CiPaw.03G097000' => 'cil', 'CiPaw.04G063200' => 'cil', 'CiPaw.09G007600' => 'cil', 'CiPaw.10G147700' => 'cil', 'CiPaw.13G035600' => 'cil', 'CiPaw.14G028100' => 'cil', 'ClCG00G006790' => 'cla', 'ClCG04G007990' => 'cla', 'ClCG05G007510' => 'cla', 'ClCG06G006830' => 'cla', 'ClCG08G008040' => 'cla', 'ClCG10G019460' => 'cla', 'COL.COLO4_14186' => 'col', 'COL.COLO4_15825' => 'col', 'COL.COLO4_20043' => 'col', 'COL.COLO4_29836' => 'col', 'COL.COLO4_34168' => 'col', 'COL.COLO4_35237' => 'col', 'Cpa.g.sc228.4' => 'cpa', 'Cpa.g.sc3.263' => 'cpa', 'Cpa.g.sc44.92' => 'cpa', 'Cpa.g.sc5.95' => 'cpa', 'Cpa.g.sc942.2' => 'cpa', 'CsaV3_2G012960' => 'csa', 'CsaV3_2G032920' => 'csa', 'CsaV3_3G016370' => 'csa', 'CsaV3_3G036720' => 'csa', 'CsaV3_4G025220' => 'csa', 'CSS0000688' => 'camsi', 'CSS0000952' => 'camsi', 'CSS0007817' => 'camsi', 'CSS0011433' => 'camsi', 'CSS0019725' => 'camsi', 'CSS0020893' => 'camsi', 'CSS0021658' => 'camsi', 'CSS0040872' => 'camsi', 'CSS0042952' => 'camsi', 'CSS0046882' => 'camsi', 'DCAR_002336' => 'dca', 'DCAR_009435' => 'dca', 'DCAR_017633' => 'dca', 'DCAR_018128' => 'dca', 'DCAR_019858' => 'dca', 'DCAR_020785' => 'dca', 'DCAR_027291' => 'dca', 'DCAR_030735' => 'dca', 'Dinv07995' => 'din', 'Dinv19813' => 'din', 'Dinv28529' => 'din', 'Dinv29888' => 'din', 'Dinv31285' => 'din', 'Dinv35567' => 'din', 'Dinv37390' => 'din', 'Dinv44655' => 'din', 'Duzib052G0569' => 'dzi', 'Duzib084G1238' => 'dzi', 'Duzib093G0642' => 'dzi', 'Duzib093G2037' => 'dzi', 'Duzib106G0330' => 'dzi', 'Duzib106G1292' => 'dzi', 'Duzib114G0814' => 'dzi', 'Duzib128G1658' => 'dzi', 'Duzib128G1811' => 'dzi', 'Duzib151G0100' => 'dzi', 'Duzib205G1682' => 'dzi', 'ECA232G0362' => 'eca', 'ECA232G0841' => 'eca', 'ECA233G1141' => 'eca', 'ECA233G2488' => 'eca', 'ECA233G3387' => 'eca', 'ECA238G1836' => 'eca', 'ECA247G3411' => 'eca', 'ECA248G0356' => 'eca', 'EL10Ac3g05780' => 'bvu', 'EL10Ac3g05909' => 'bvu', 'EL10Ac5g11584' => 'bvu', 'EL10Ac7g16772' => 'bvu', 'Eucgr.A01293' => 'egr', 'Eucgr.A01564' => 'egr', 'Eucgr.A02873' => 'egr', 'Eucgr.H03141' => 'egr', 'Eucgr.J01025' => 'egr', 'Eucgr.K02377' => 'egr', 'Eucgr.K02383' => 'egr', 'Eucgr.K02388' => 'egr', 'Eucgr.K02398' => 'egr', 'Eucgr.K02409' => 'egr', 'FAN01G0103' => 'fan', 'FAN01G1215' => 'fan', 'FAN01G1798' => 'fan', 'FAN01G1969' => 'fan', 'FAN01G2183' => 'fan', 'FAN01G2985' => 'fan', 'FAN02G3621' => 'fan', 'FAN03G0227' => 'fan', 'FAN03G1263' => 'fan', 'FAN03G1610' => 'fan', 'FAN03G1684' => 'fan', 'FAN03G2223' => 'fan', 'FAN03G2377' => 'fan', 'FAN03G3063' => 'fan', 'FAN05G1457' => 'fan', 'FAN05G2609' => 'fan', 'FAN06G0477' => 'fan', 'FAN06G2212' => 'fan', 'FAN06G2794' => 'fan', 'FAN06G3252' => 'fan', 'FAN06G3955' => 'fan', 'FAN06G4039' => 'fan', 'FAN06G4199' => 'fan', 'FAN06G4987' => 'fan', 'FAN09G2863' => 'fan', 'FAN10G0953' => 'fan', 'FAN10G2187' => 'fan', 'FAN10G3884' => 'fan', 'FAN10G4352' => 'fan', 'FAN11G2784' => 'fan', 'FAN12G0506' => 'fan', 'FAN14G2298' => 'fan', 'FAN17G0545' => 'fan', 'FvH4_3g07590' => 'fve', 'FvH4_4g03090' => 'fve', 'FvH4_6g17590' => 'fve', 'FvH4_7g06360' => 'fve', 'FvH4_7g23110' => 'fve', 'FvH4_7g23120' => 'fve', 'FvH4_7g23140' => 'fve', 'FvH4_7g23181' => 'fve', 'FvH4_7g23300' => 'fve', 'FvH4_7g23330' => 'fve', 'FvH4_7g23480' => 'fve', 'FvH4_7g24601' => 'fve', 'FvH4_7g28220' => 'fve', 'Glyma.01G101100' => 'gma', 'Glyma.03G067800' => 'gma', 'Glyma.03G190000' => 'gma', 'Glyma.04G237100' => 'gma', 'Glyma.06G127100' => 'gma', 'Glyma.07G135700' => 'gma', 'Glyma.09G152900' => 'gma', 'Glyma.10G008200' => 'gma', 'Glyma.10G065400' => 'gma', 'Glyma.10G178300' => 'gma', 'Glyma.10G188300' => 'gma', 'Glyma.10G201200' => 'gma', 'Glyma.16G203800' => 'gma', 'Glyma.18G185600' => 'gma', 'Glyma.19G190300' => 'gma', 'Glyma.20G087700' => 'gma', 'Glyma.20G189200' => 'gma', 'Glyma.20G202500' => 'gma', 'Glyma.20G211800' => 'gma', 'Gohir.1Z049384' => 'ghi', 'Gohir.A01G129300' => 'ghi', 'Gohir.A01G210200' => 'ghi', 'Gohir.A01G221675' => 'ghi', 'Gohir.A02G037002' => 'ghi', 'Gohir.A04G084500' => 'ghi', 'Gohir.A05G394150' => 'ghi', 'Gohir.A05G394200' => 'ghi', 'Gohir.A09G043500' => 'ghi', 'Gohir.A09G136200' => 'ghi', 'Gohir.A09G224900' => 'ghi', 'Gohir.A11G008200' => 'ghi', 'Gohir.A12G263900' => 'ghi', 'Gohir.A13G092315' => 'ghi', 'Gohir.D01G118900' => 'ghi', 'Gohir.D01G199100' => 'ghi', 'Gohir.D01G210900' => 'ghi', 'Gohir.D02G043700' => 'ghi', 'Gohir.D04G020500' => 'ghi', 'Gohir.D04G020600' => 'ghi', 'Gohir.D04G123300' => 'ghi', 'Gohir.D09G045000' => 'ghi', 'Gohir.D09G138300' => 'ghi', 'Gohir.D09G226700' => 'ghi', 'Gohir.D11G007400' => 'ghi', 'Gohir.D12G264150' => 'ghi', 'Gorai.001G249800' => 'gra', 'Gorai.002G145000' => 'gra', 'Gorai.002G243500' => 'gra', 'Gorai.002G256600' => 'gra', 'Gorai.005G048100' => 'gra', 'Gorai.006G065400' => 'gra', 'Gorai.006G248400' => 'gra', 'Gorai.007G008900' => 'gra', 'Gorai.008G283400' => 'gra', 'Gorai.012G024300' => 'gra', 'Gorai.012G106200' => 'gra', 'GSVIVG01018505001' => 'vvi', 'GSVIVG01027725001' => 'vvi', 'GSVIVG01033764001' => 'vvi', 'GSVIVG01034121001' => 'vvi', 'GSVIVG01034732001' => 'vvi', 'HanXRQChr01g0001381' => 'han', 'HanXRQChr02g0052241' => 'han', 'HanXRQChr03g0092251' => 'han', 'HanXRQChr05g0147461' => 'han', 'HanXRQChr07g0206301' => 'han', 'HanXRQChr09g0263701' => 'han', 'HanXRQChr10g0289691' => 'han', 'HanXRQChr11g0348601' => 'han', 'HanXRQChr11g0348611' => 'han', 'HanXRQChr11g0351061' => 'han', 'HanXRQChr13g0425491' => 'han', 'HanXRQChr14g0456311' => 'han', 'HanXRQChr15g0486141' => 'han', 'HanXRQChr15g0491561' => 'han', 'Haze_02629' => 'cav', 'Haze_11333' => 'cav', 'Haze_13826' => 'cav', 'Haze_19519' => 'cav', 'Haze_20838' => 'cav', 'Hma1.2p1_0084F.1_g043100' => 'hma', 'Hma1.2p1_0310F.1_g120740' => 'hma', 'Hma1.2p1_0352F.1_g133110' => 'hma', 'Hma1.2p1_0492F.1_g164720' => 'hma', 'Hma1.2p1_0651F.1_g195760' => 'hma', 'Hma1.2p1_0654F.1_g196370' => 'hma', 'Hma1.2p1_0766F.1_g215300' => 'hma', 'HPP92_008404' => 'vpl', 'HPP92_008405' => 'vpl', 'HPP92_012607' => 'vpl', 'HPP92_014294' => 'vpl', 'HPP92_021572' => 'vpl', 'HPP92_022627' => 'vpl', 'HPP92_026374' => 'vpl', 'Hund20451' => 'sun', 'Lalb_Chr02g0149961' => 'lal', 'Lalb_Chr03g0033071' => 'lal', 'Lalb_Chr03g0037091' => 'lal', 'Lalb_Chr03g0042421' => 'lal', 'Lalb_Chr06g0170111' => 'lal', 'Lalb_Chr08g0240371' => 'lal', 'Lalb_Chr11g0066731' => 'lal', 'Lalb_Chr19g0128421' => 'lal', 'Lalb_Chr20g0112291' => 'lal', 'Lalb_Chr21g0312381' => 'lal', 'Lalb_Chr21g0313151' => 'lal', 'Lj1g0006934' => 'lja', 'Lj1g0010082' => 'lja', 'Lj1g0011180' => 'lja', 'Lj1g0023663' => 'lja', 'Lj1g0027247' => 'lja', 'Lj1P985T14' => 'lonja', 'Lj2C127T19' => 'lonja', 'Lj2C90T5' => 'lonja', 'Lj2g0011991' => 'lja', 'Lj3g0005658' => 'lja', 'Lj3P1004T19' => 'lonja', 'Lj3P933T23' => 'lonja', 'Lj5g0003330' => 'lja', 'Lj5g0006884' => 'lja', 'Lj5g0009170' => 'lja', 'Lj5g0024789' => 'lja', 'Lj6g0000947' => 'lja', 'Lj6P660T14' => 'lonja', 'Lj6P660T15' => 'lonja', 'Lj8C36T3' => 'lonja', 'Lju2578C0G6' => 'lonja', 'Lsat_1_v5_gn_0_10840' => 'lsa', 'Lsat_1_v5_gn_1_50600' => 'lsa', 'Lsat_1_v5_gn_1_50620' => 'lsa', 'Lsat_1_v5_gn_2_102800' => 'lsa', 'Lsat_1_v5_gn_2_129700' => 'lsa', 'Lsat_1_v5_gn_3_122300' => 'lsa', 'Lsat_1_v5_gn_5_71940' => 'lsa', 'Lsat_1_v5_gn_6_26921' => 'lsa', 'Lsat_1_v5_gn_9_29841' => 'lsa', 'Lsat_1_v5_gn_9_52680' => 'lsa', 'Manes.03G167100' => 'mes', 'Manes.06G138500' => 'mes', 'Manes.07G092000' => 'mes', 'Manes.08G019600' => 'mes', 'Manes.09G060788' => 'mes', 'Manes.14G032800' => 'mes', 'Manes.15G038100' => 'mes', 'Mapoly0061s0047' => 'mpo', 'MBI01_g42505_MAGBIO' => 'mbi', 'MBI04_g32241_MAGBIO' => 'mbi', 'MBI05_g35192_MAGBIO' => 'mbi', 'MBI14_g11600_MAGBIO' => 'mbi', 'MBI18_g34564_MAGBIO' => 'mbi', 'MD01G1186200' => 'mdo', 'MD02G1244700' => 'mdo', 'MD07G1072400' => 'mdo', 'MD07G1258400' => 'mdo', 'MD12G1099400' => 'mdo', 'MD13G1210100' => 'mdo', 'MD14G1093600' => 'mdo', 'MD16G1213000' => 'mdo', 'Medtr0318s0020' => 'mtr', 'Medtr1g044135' => 'mtr', 'Medtr1g061540' => 'mtr', 'Medtr1g073890' => 'mtr', 'Medtr1g092540' => 'mtr', 'Medtr3g091180' => 'mtr', 'Medtr4g021260' => 'mtr', 'Medtr6g461910' => 'mtr', 'Medtr7g063040' => 'mtr', 'Medtr7g103490' => 'mtr', 'MELO3C003148.2' => 'cme', 'MELO3C006836.2' => 'cme', 'MELO3C009426.2' => 'cme', 'MELO3C031219.2' => 'cme', 'Migut.F00425' => 'egut', 'Migut.F00919' => 'egut', 'Migut.G00453' => 'egut', 'Migut.J00496' => 'egut', 'Migut.J01100' => 'egut', 'Migut.L01747' => 'egut', 'Migut.L01959' => 'egut', 'Migut.N00251' => 'egut', 'MSTRG.10249' => 'ama', 'MSTRG.10342' => 'ama', 'MSTRG.17011' => 'ama', 'MSTRG.27167' => 'ama', 'MSTRG.4115' => 'ama', 'MSTRG.9112' => 'ama', 'MSTRG.9916' => 'ama', 'Nitab4.5_0000072g0330' => 'nta', 'Nitab4.5_0000342g0210' => 'nta', 'Nitab4.5_0001922g0110' => 'nta', 'Nitab4.5_0002170g0090' => 'nta', 'Nitab4.5_0004475g0010' => 'nta', 'Nitab4.5_0005421g0010' => 'nta', 'Nitab4.5_0007234g0010' => 'nta', 'Nitab4.5_0008915g0010' => 'nta', 'Nitab4.5_0009688g0010' => 'nta', 'Nitab4.5_0011545g0010' => 'nta', 'Nitab4.5_0013050g0010' => 'nta', 'Nn1g01205' => 'nnu', 'Nn1g08046' => 'nnu', 'Nn2g11212' => 'nnu', 'Nn4g26423' => 'nnu', 'Nn6g35081' => 'nnu', 'Oeu019950.1' => 'oeu', 'Oeu021425.1' => 'oeu', 'Oeu026558.2' => 'oeu', 'Oeu027979.1' => 'oeu', 'Oeu028063.1' => 'oeu', 'Oeu030166.1' => 'oeu', 'Oeu038891.1' => 'oeu', 'Oeu039838.2' => 'oeu', 'Oeu040552.1' => 'oeu', 'Oeu040553.1' => 'oeu', 'Oeu059843.1' => 'oeu', 'Os01g0845100' => 'osa', 'Os03g0270500' => 'osa', 'Os03g0858600' => 'osa', 'Os04g0169500' => 'osa', 'Os05g0406550' => 'osa', 'Os05g0457600' => 'osa', 'Os11g0238400' => 'osa', 'Os12g0146500' => 'osa', 'Peaxi162Scf00024g00165' => 'pax', 'Peaxi162Scf00094g00073' => 'pax', 'Peaxi162Scf00113g00036' => 'pax', 'Peaxi162Scf00192g00102' => 'pax', 'Peaxi162Scf00398g00042' => 'pax', 'PGR004G1842' => 'pgr', 'PGR004G1950' => 'pgr', 'PGR031G3119' => 'pgr', 'PGR042G3734' => 'pgr', 'PGR142G2225' => 'pgr', 'PGSC0003DMG400002686' => 'stu', 'PGSC0003DMG400011073' => 'stu', 'PGSC0003DMG400013707' => 'stu', 'PGSC0003DMG400017254' => 'stu', 'PGSC0003DMG400027319' => 'stu', 'PGSC0003DMG400031011' => 'stu', 'PGSC0003DMG400046674' => 'stu', 'Phvul.001G185600' => 'pvu', 'Phvul.004G126500' => 'pvu', 'Phvul.007G106000' => 'pvu', 'Phvul.007G111300' => 'pvu', 'Phvul.007G129200' => 'pvu', 'Phvul.007G224000' => 'pvu', 'Phvul.007G272000' => 'pvu', 'Phvul.008G117600' => 'pvu', 'Phvul.009G055200' => 'pvu', 'Phvul.010G016200' => 'pvu', 'Potri.006G117000' => 'ptr', 'Potri.008G026800' => 'ptr', 'Potri.008G164700' => 'ptr', 'Potri.010G074000' => 'ptr', 'Potri.010G233700' => 'ptr', 'Potri.012G129900' => 'ptr', 'Potri.015G131800' => 'ptr', 'Pp3c13_14500' => 'ppa', 'Pp3c21_17200' => 'ppa', 'Pp3c3_15760' => 'ppa', 'Prupe.1G034600' => 'ppe', 'Prupe.2G090600' => 'ppe', 'Prupe.2G282900' => 'ppe', 'Prupe.7G119700' => 'ppe', 'Psat0s2386g0040' => 'psa', 'Psat1g110920' => 'psa', 'Psat3g036400' => 'psa', 'Psat3g136640' => 'psa', 'Psat5g017440' => 'psa', 'Psat5g079080' => 'psa', 'Psat6g105520' => 'psa', 'Psat6g112520' => 'psa', 'Psat6g132840' => 'psa', 'Psat6g175000' => 'psa', 'Psat7g124240' => 'psa', 'Psat7g239280' => 'psa', 'PSO063G4352' => 'pso', 'PSO063G4601' => 'pso', 'PSO210G2818' => 'pso', 'PSO339G4088' => 'pso', 'PSO339G4230' => 'pso', 'PSO339G6117' => 'pso', 'PSO478G1268' => 'pso', 'PSO513G0042' => 'pso', 'PSO782G3545' => 'pso', 'PSO832G0140' => 'pso', 'QL04p040771' => 'qlo', 'QL06p016611' => 'qlo', 'QL07p029214' => 'qlo', 'QL07p029860' => 'qlo', 'QL07p040834' => 'qlo', 'QL12p039606' => 'qlo', 'RcHm_v2.0_Chr1g0334451' => 'rch', 'RcHm_v2.0_Chr1g0367491' => 'rch', 'RcHm_v2.0_Chr1g0367501' => 'rch', 'RcHm_v2.0_Chr1g0367511' => 'rch', 'RcHm_v2.0_Chr1g0368371' => 'rch', 'RcHm_v2.0_Chr1g0368421' => 'rch', 'RcHm_v2.0_Chr1g0375201' => 'rch', 'RcHm_v2.0_Chr3g0471861' => 'rch', 'RcHm_v2.0_Chr4g0391361' => 'rch', 'RcHm_v2.0_Chr5g0011101' => 'rch', 'RcHm_v2.0_Chr5g0011111' => 'rch', 'Rhsim03G0082800' => 'rsi', 'Rhsim03G0109600' => 'rsi', 'Rhsim03G0172100' => 'rsi', 'Rhsim04G0188300' => 'rsi', 'RhsimUnG0178700' => 'rsi', 'RhsimUnG0178800' => 'rsi', 'Sabra06G0091500' => 'sbr', 'Sabra06G0091700' => 'sbr', 'Sabra06G0091900' => 'sbr', 'Sabra08G0018300' => 'sbr', 'Sabra08G0125300' => 'sbr', 'Sabra10G0034500' => 'sbr', 'Sabra10G0181300' => 'sbr', 'Sabra12G0097800' => 'sbr', 'Sabra15G0144800' => 'sbr', 'SalBow2G0103' => 'sbo', 'SalBow3G1886' => 'sbo', 'SalBow3G2501' => 'sbo', 'SalBow4G0226' => 'sbo', 'SalBow4G0262' => 'sbo', 'SalBow4G0539' => 'sbo', 'SalBow4G1111' => 'sbo', 'SalBow5G4558' => 'sbo', 'SalBow5G5715' => 'sbo', 'Sc01g0004520' => 'sci', 'Sc02g0001210' => 'sci', 'Sc19g0003490' => 'sci', 'Sc20g0001340' => 'sci', 'Sc25g0000170' => 'sci', 'Sed0002889' => 'sed', 'Sed0003956' => 'sed', 'Sed0008085' => 'sed', 'Sed0013172' => 'sed', 'Sed0021876' => 'sed', 'Sed0023468' => 'sed', 'Sed0024634' => 'sed', 'SEGI_09659' => 'sgi', 'SEGI_23628' => 'sgi', 'SGA_v2.0_scaffold101G29831' => 'sas', 'SGA_v2.0_scaffold10G05244' => 'sas', 'SGA_v2.0_scaffold13G06501' => 'sas', 'SGA_v2.0_scaffold165G38200' => 'sas', 'SGA_v2.0_scaffold165G38205' => 'sas', 'SGA_v2.0_scaffold277G46730' => 'sas', 'SGA_v2.0_scaffold2G01133' => 'sas', 'SGA_v2.0_scaffold453G51869' => 'sas', 'SGA_v2.0_scaffold486G52379' => 'sas', 'SGA_v2.0_scaffold79G25664' => 'sas', 'SGA_v2.0_scaffold94G28570' => 'sas', 'SGA_v2.0_scaffold9G04812' => 'sas', 'SHI13860' => 'shi', 'SHI21306' => 'shi', 'SMO358G0669' => 'smo', 'Solyc03g007090.1' => 'sly', 'Solyc09g008930.4' => 'sly', 'Solyc09g089640.2' => 'sly', 'Solyc10g084880.3' => 'sly', 'Solyc11g007660.1' => 'sly', 'Sopen03g003080' => 'spe', 'Sopen09g003700' => 'spe', 'Sopen09g032580' => 'spe', 'Sopen10g034340' => 'spe', 'Sopen11g003520' => 'spe', 'Sp3g20810' => 'spa', 'Sp6g13870' => 'spa', 'Sp6g38210' => 'spa', 'TAR362G0904' => 'tar', 'TAR365G1213' => 'tar', 'TAR369G0999' => 'tar', 'TAR374G1199' => 'tar', 'TAR375G0762' => 'tar', 'TAR542G0001' => 'tar', 'TAR542G0002' => 'tar', 'TAR602G0005' => 'tar', 'TAR623G1497' => 'tar', 'TAR629G2253' => 'tar', 'TAR629G2554' => 'tar', 'TAR633G2497' => 'tar', 'TAR636G0395' => 'tar', 'THA.LOC104804745' => 'tha', 'THA.LOC104808608' => 'tha', 'THA.LOC104811507' => 'tha', 'THA.LOC104816453' => 'tha', 'THA.LOC104823193' => 'tha', 'Thecc.03G162600' => 'tca', 'Thecc.04G249600' => 'tca', 'Thecc.05G034200' => 'tca', 'Thecc.05G079600' => 'tca', 'Thecc.10G098000' => 'tca', 'Thhalv10013027m.g' => 'esa', 'Thhalv10013415m.g' => 'esa', 'Thhalv10020490m.g' => 'esa', 'TPR.G10659' => 'tpr', 'TPR.G12956' => 'tpr', 'TPR.G15880' => 'tpr', 'TPR.G17311' => 'tpr', 'TPR.G18452' => 'tpr', 'TPR.G2518' => 'tpr', 'TPR.G26444' => 'tpr', 'TPR.G31300' => 'tpr', 'TPR.G5573' => 'tpr', 'TPR.G5660' => 'tpr', 'TWI15G0842' => 'twi', 'TWI23G0035' => 'twi', 'TWI39G1212' => 'twi', 'TWI53G0400' => 'twi', 'TWI53G0538' => 'twi', 'TWI53G1606' => 'twi', 'TWI74G0714' => 'twi', 'unitig_0.g1587' => 'ugi', 'unitig_27.g25396' => 'ugi', 'unitig_37.g12330' => 'ugi', 'unitig_46.g18614' => 'ugi', 'unitig_747.g21661' => 'ugi', 'unitig_747.g21662' => 'ugi', 'unitig_748.g8314' => 'ugi', 'vmacro07218' => 'vma', 'vmacro07379' => 'vma', 'vmacro08447' => 'vma', 'vmacro23079' => 'vma', 'vmacro23081' => 'vma', 'VMungo0251G1983' => 'vmu', 'VMungo0331G0181' => 'vmu', 'VMungo0464G1233' => 'vmu', 'VMungo0720G0129' => 'vmu', 'VMungo0720G1102' => 'vmu', 'VMungo0720G1782' => 'vmu', 'VMungo0720G2697' => 'vmu', 'VMungo0720G2874' => 'vmu', 'VMungo1309G1173' => 'vmu', 'VMungo1383G2442' => 'vmu', 'VMungo1383G2941' => 'vmu', 'Zm00001eb088190' => 'zma', 'Zm00001eb130920' => 'zma', 'Zm00001eb130930' => 'zma', 'Zm00001eb199440' => 'zma', 'Zm00001eb199450' => 'zma', 'Zm00001eb210430' => 'zma', 'Zm00001eb232990' => 'zma', 'Zm00001eb293640' => 'zma', 'Zm00001eb293650' => 'zma', 'Zm00001eb356230' => 'zma', 'Zm00001eb367860' => 'zma', 'Zm00001eb397810' => 'zma', 'Zm00001eb406510' => 'zma' ) $gf_id = 'HOM05D000816' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000816' ) $data_identifier = 'HOM05D000816' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 3, 'aox' => (int) 6, 'arhy' => (int) 12, 'ath' => (int) 3, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 8, 'bca' => (int) 7, 'bol' => (int) 5, 'bra' => (int) 4, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 3, 'car' => (int) 10, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 5, 'camsi' => (int) 10, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 33, 'fve' => (int) 13, 'gma' => (int) 19, 'ghi' => (int) 26, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 1, 'lal' => (int) 11, 'lja' => (int) 12, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 8, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 10, 'ptr' => (int) 7, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 12, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 11, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 2, 'sas' => (int) 12, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 13, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 10, 'twi' => (int) 7, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 11, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb406510' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1